Simulation of DNA mobility in one-dimension using bead-spring model
Abstract
This paper studies the one-dimensional motion of a DNA molecule through a microchannel with a single electric trap. The three particle molecule model uses three beads connected via harmonic springs in the presence of a Weeks-Chandler-Andersen repulsive potential and a Brownian force. Using the stochastic fourth order Runge-Kutta method, the spring constant is sought that allows motion through the microchannel without overlap between the three beads.
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Article ID
SPP-2008-4B-05
Section
Interdisciplinary Studies
Published
2008-10-22
How to Cite
[1]
S Johnson and C Villagonzalo, Simulation of DNA mobility in one-dimension using bead-spring model, Proceedings of the Samahang Pisika ng Pilipinas 26, SPP-2008-4B-05 (2008). URL: https://proceedings.spp-online.org/article/view/SPP-2008-4B-05.